fiji
fiji


Author Comment Last activity Moderation
geraldmc "Thanks Chris, I got your lookup table working now, sweet! " | Read more » about 10 years ago
cfastie "Glad it's working. Here is the look up table (lut) I have been using recently. . A legend for the new colormap. . After another few weeks of tria..." | Read more » about 10 years ago
silvanhi "Thank you! now it works! :) " | Read more » about 10 years ago
geraldmc "/Applications/Fiji.app/luts " | Read more » about 10 years ago
silvanhi "Thanks for your response.. I did manage it to work it like you describe. my only problem is that I want to use the "NDVIblue2red.lut" which is in t..." | Read more » about 10 years ago
geraldmc "Good question. There are some luts in a separate directory on Github that I didn't grab. Once you install the plugins you'll see an added option 'P..." | Read more » about 10 years ago
silvanhi "But the .lut files aren't included in your approach, are they? " | Read more » about 10 years ago
geraldmc "I created a directory in my root and put everything there, then opened Fiji and registered the plugins manually: Plugins -> Install Plugin ->..." | Read more » about 10 years ago
theowallis "Thanks for your reply Chris! " | Read more » about 10 years ago
cfastie "Theo, I have gotten that error too, even when using my own pairs of simultaneous photos (I think the cameras' clocks were way off). I forget what I..." | Read more » about 10 years ago
theowallis "Hi I am trying to process two images in Fiji, one raw infrared, one visible spectrum. When choosing the two image files from which to create a tex..." | Read more » about 10 years ago
cfastie "I don’t quite understand how this subtraction would work. When using a red filter, we expect the blue channel to record mostly near infrared light ..." | Read more » about 10 years ago
nedhorning "Hi Alan, That sounds good. The first thing your son will realize is that I'm not a very talented programmer. I'm traveling until early next week b..." | Read more » about 10 years ago
cfastie "I posted a note about the new lut. There is a tab delimited file of the colormap in a comment there. I will put the lut file for use in Fiji there ..." | Read more » about 10 years ago
alanw "Hi Ned, I have a son who is a pretty good programmer and knows Java. I talked to him and he is seeing if he can use your plugin and add a piece to..." | Read more » about 10 years ago
nedhorning "Hi - At this point the plugin does not subtract the NIR from the red. I've been doing this subtraction as part of my calibration tests: http://publ..." | Read more » about 10 years ago
aswicks "Ned, Using a red filter, does the plugin subtract the blue (NIR) band from the red (red + NIR) to get a red band and then do the NDVI & DVI mat..." | Read more » about 10 years ago
silvanhi "really intersting. i dont no how to make a lut but i'd love to have one. My idea is to mirror the values in the NDVIBlu2red.lut from NDVI 0 to 1 an..." | Read more » over 10 years ago
cfastie "Here is an NDVI image of your latest scene using a new lut I have been trying. I'll post a research note about this lut soon. " | Read more » over 10 years ago
cfastie "Silvan, Your new results look really good. You can probably improve on those settings for any particular scene, but it will require more trial and..." | Read more » over 10 years ago
silvanhi "Thanks Chris for your information. I tried the values from your note initially for the HSV formula but they didn't work out so good so I tried my..." | Read more » over 10 years ago
cfastie "Silvan, Okay, infraBlueNDVI.lut is the same as NDVIBlu2red.lut Infragram does not use the luts that are used in Fiji. Infragram uses its own look..." | Read more » over 10 years ago
silvanhi "Hi Chris, Thanks for your fast answer. 1.) Here is the infraBlueNDVI.lut; I think its quite the same as the NDVIBlu2red.lut 2.) Ok. I use from..." | Read more » over 10 years ago
cfastie "Hi Silvanhi, That's a gorgeous landscape. And a great subject for ndvi images. There are a couple of things I don't understand about your results...." | Read more » over 10 years ago